IL_4V6I_045
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UGGC*GUCUGUA
- Length
- 11 nucleotides
- Bulged bases
- 4V6I|1|CA|U|1432
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_045 not in the Motif Atlas
- Homologous match to IL_8C3A_457
- Geometric discrepancy: 0.4117
- The information below is about IL_8C3A_457
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_55620.1
- Basepair signature
- cWW-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4V6I|1|CA|U|1276
4V6I|1|CA|G|1277
4V6I|1|CA|G|1278
4V6I|1|CA|C|1279
*
4V6I|1|CA|G|1429
4V6I|1|CA|U|1430
4V6I|1|CA|C|1431
4V6I|1|CA|U|1432
4V6I|1|CA|G|1433
4V6I|1|CA|U|1434
4V6I|1|CA|A|1436
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein rpS3 (S3p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AN
- 40S ribosomal protein rpS29 (S14p)
- Chain CC
- MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')
Coloring options: