IL_4V6I_046
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 4V6I|1|CA|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_046 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.3762
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
4V6I|1|CA|C|1280
4V6I|1|CA|G|1281
*
4V6I|1|CA|C|1426
4V6I|1|CA|A|1427
4V6I|1|CA|G|1428
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein rpS3 (S3p)
- Chain AE
- 40S ribosomal protein rpS2 (S5p)
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AN
- 40S ribosomal protein rpS29 (S14p)
- Chain CC
- MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')
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