IL_4V6I_047

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UGGU*ACGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_047 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2376

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6I|1|CA|U|1290
4V6I|1|CA|G|1291
4V6I|1|CA|G|1292
4V6I|1|CA|U|1293
*
4V6I|1|CA|A|1322
4V6I|1|CA|C|1323
4V6I|1|CA|G|1324
4V6I|1|CA|A|1325

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein rpS0 (S2p)

Chain AB

40S ribosomal protein rpS3 (S3p)

Chain AE

40S ribosomal protein rpS2 (S5p)