IL_4V6I_059

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_059 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.1964

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V6I|1|CA|U|1656
4V6I|1|CA|U|1657
4V6I|1|CA|G|1658
*
4V6I|1|CA|U|1743
4V6I|1|CA|A|1744

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AL

40S ribosomal protein rpS23 (S12p)

Chain BM

60S ribosomal protein rpL23 (L14p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA