IL_4V6I_061
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_061 not in the Motif Atlas
- Homologous match to IL_4V88_471
- Geometric discrepancy: 0.3046
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V6I|1|CA|U|1669
4V6I|1|CA|G|1670
4V6I|1|CA|A|1671
4V6I|1|CA|G|1672
*
4V6I|1|CA|C|1729
4V6I|1|CA|A|1730
4V6I|1|CA|A|1731
4V6I|1|CA|A|1732
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AU
- 40S ribosomal protein S24
- Chain BZ
- 60S ribosomal protein rpL24 (L24e)
Coloring options: