IL_4V6I_063

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_063 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.2574

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V6I|1|CA|C|1675
4V6I|1|CA|U|1676
4V6I|1|CA|C|1677
4V6I|1|CA|A|1678
*
4V6I|1|CA|U|1723
4V6I|1|CA|U|1724
4V6I|1|CA|U|1725
4V6I|1|CA|G|1726

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AU

40S ribosomal protein S24

Chain BZ

60S ribosomal protein rpL24 (L24e)

Chain DA

Large subunit ribosomal RNA; LSU rRNA