IL_4V6I_064

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_064 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.3379

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V6I|1|CA|A|1678
4V6I|1|CA|G|1679
4V6I|1|CA|G|1680
4V6I|1|CA|A|1681
4V6I|1|CA|U|1682
*
4V6I|1|CA|A|1719
4V6I|1|CA|G|1720
4V6I|1|CA|A|1721
4V6I|1|CA|A|1722
4V6I|1|CA|U|1723

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AU

40S ribosomal protein S24

Chain BZ

60S ribosomal protein rpL24 (L24e)