IL_4V6I_067

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_067 not in the Motif Atlas

Geometric match to IL_7KGA_006

Geometric discrepancy: 0.252

The information below is about IL_7KGA_006

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V6I|1|DA|C|7
4V6I|1|DA|C|8
*
4V6I|1|DB|G|150
4V6I|1|DB|C|151
4V6I|1|DB|G|152

Current chains

Chain DA

25S rRNA

Chain DB

5.8S rRNA

Nearby chains

Chain BH

60S ribosomal protein rpL8 (L7ae)

Chain BP

60S ribosomal protein rpL15 (L15e)

Chain BX

60S ribosomal protein rpL25 (L23p)