IL_4V6I_072
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_072 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.2105
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V6I|1|DA|C|82
4V6I|1|DA|U|83
4V6I|1|DA|U|84
4V6I|1|DA|A|85
4V6I|1|DA|G|86
4V6I|1|DA|U|87
4V6I|1|DA|A|88
4V6I|1|DA|A|89
*
4V6I|1|DA|U|97
4V6I|1|DA|G|98
4V6I|1|DA|A|99
4V6I|1|DA|A|100
4V6I|1|DA|G|101
4V6I|1|DA|C|102
4V6I|1|DA|G|103
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BL
- 60S ribosomal protein rpL13 (L13e)
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
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