IL_4V6I_095

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGG*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_095 not in the Motif Atlas

Geometric match to IL_5UNE_006

Geometric discrepancy: 0.2607

The information below is about IL_5UNE_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6I|1|DA|G|726
4V6I|1|DA|G|727
4V6I|1|DA|G|728
*
4V6I|1|DA|U|741
4V6I|1|DA|G|742
4V6I|1|DA|C|743

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BO

60S ribosomal protein rpL28 (L15p)

Chain BR

60S ribosomal protein rpL18 (L18e)

Chain BU

60S ribosomal protein rpL21 (L21e)