IL_4V6I_104
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 4V6I|1|DA|G|908, 4V6I|1|DA|A|920, 4V6I|1|DA|A|921, 4V6I|1|DA|U|922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_104 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.1517
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V6I|1|DA|G|907
4V6I|1|DA|G|908
4V6I|1|DA|G|909
*
4V6I|1|DA|U|919
4V6I|1|DA|A|920
4V6I|1|DA|A|921
4V6I|1|DA|U|922
4V6I|1|DA|C|923
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain BV
- 60S ribosomal protein rpL17 (L22p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
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