IL_4V6I_109

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_109 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2159

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V6I|1|DA|U|988
4V6I|1|DA|A|989
4V6I|1|DA|U|990
*
4V6I|1|DA|A|1061
4V6I|1|DA|A|1062
4V6I|1|DA|G|1063

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BU

60S ribosomal protein rpL21 (L21e)

Chain Be

60S ribosomal protein rpL7 (L30p)