IL_4V6I_115

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCCUU*GGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_115 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2588

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V6I|1|DA|U|1067
4V6I|1|DA|C|1068
4V6I|1|DA|C|1069
4V6I|1|DA|U|1070
4V6I|1|DA|U|1071
*
4V6I|1|DA|G|1089
4V6I|1|DA|G|1090
4V6I|1|DA|A|1091
4V6I|1|DA|C|1092
4V6I|1|DA|A|1093

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BU

60S ribosomal protein rpL21 (L21e)

Chain By

Unknown protein