IL_4V6I_118
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 4V6I|1|DA|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_118 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.2139
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4V6I|1|DA|U|1167
4V6I|1|DA|U|1168
4V6I|1|DA|A|1169
4V6I|1|DA|A|1170
4V6I|1|DA|G|1171
*
4V6I|1|DA|C|1328
4V6I|1|DA|U|1329
4V6I|1|DA|A|1330
4V6I|1|DA|U|1331
4V6I|1|DA|A|1332
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BR
- 60S ribosomal protein rpL18 (L18e)
- Chain Be
- 60S ribosomal protein rpL7 (L30p)
- Chain Bh
- 60S ribosomal protein pL32 (L32e)
- Chain Bj
- 60S ribosomal protein rpL33 (L35ae)
- Chain DC
- 5S ribosomal RNA; 5S rRNA
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