IL_4V6I_119
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_119 not in the Motif Atlas
- Geometric match to IL_4V9F_038
- Geometric discrepancy: 0.138
- The information below is about IL_4V9F_038
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
4V6I|1|DA|U|1173
4V6I|1|DA|G|1174
4V6I|1|DA|C|1175
4V6I|1|DA|C|1176
4V6I|1|DA|G|1177
4V6I|1|DA|G|1178
4V6I|1|DA|A|1179
4V6I|1|DA|A|1180
*
4V6I|1|DA|U|1325
4V6I|1|DA|A|1326
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BK
- 60S ribosomal protein rpL16 (L13p)
- Chain BS
- 60S ribosomal protein rpL20 (L18ae)
- Chain Be
- 60S ribosomal protein rpL7 (L30p)
- Chain Bj
- 60S ribosomal protein rpL33 (L35ae)
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