IL_4V6I_122

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUGU*GCC

Length

7 nucleotides

Bulged bases

4V6I|1|DA|G|1209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_122 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2727

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V6I|1|DA|G|1207
4V6I|1|DA|U|1208
4V6I|1|DA|G|1209
4V6I|1|DA|U|1210
*
4V6I|1|DA|G|1295
4V6I|1|DA|C|1296
4V6I|1|DA|C|1297

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein rpL9 (L6p)

Chain BI

60S ribosomal protein rpL10 (L10e)

Chain BS

60S ribosomal protein rpL20 (L18ae)

Chain Bd

60S ribosomal protein rpL29 (L29e)

Chain DC

5S ribosomal RNA; 5S rRNA