IL_4V6I_126

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V6I|1|DA|G|1429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_126 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.123

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

4V6I|1|DA|C|1376
4V6I|1|DA|G|1377
4V6I|1|DA|U|1378
*
4V6I|1|DA|A|1428
4V6I|1|DA|G|1429
4V6I|1|DA|U|1430
4V6I|1|DA|G|1431

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain Bh

60S ribosomal protein pL32 (L32e)

Chain DB

5.8S ribosomal RNA; 5.8S rRNA