IL_4V6I_127
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UGACGAA*UCGAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_127 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.2404
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
4V6I|1|DA|U|1388
4V6I|1|DA|G|1389
4V6I|1|DA|A|1390
4V6I|1|DA|C|1391
4V6I|1|DA|G|1392
4V6I|1|DA|A|1393
4V6I|1|DA|A|1394
*
4V6I|1|DA|U|1415
4V6I|1|DA|C|1416
4V6I|1|DA|G|1417
4V6I|1|DA|A|1418
4V6I|1|DA|A|1419
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain Bh
- 60S ribosomal protein pL32 (L32e)
- Chain DB
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: