IL_4V6I_128

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_128 not in the Motif Atlas

Geometric match to IL_1MFQ_003

Geometric discrepancy: 0.2936

The information below is about IL_1MFQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V6I|1|DA|A|1394
4V6I|1|DA|G|1395
4V6I|1|DA|C|1396
*
4V6I|1|DA|G|1413
4V6I|1|DA|G|1414
4V6I|1|DA|U|1415

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Bh

60S ribosomal protein pL32 (L32e)

Chain DB

5.8S ribosomal RNA; 5.8S rRNA