IL_4V6I_130

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_130 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.2481

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4V6I|1|DA|G|1400
4V6I|1|DA|A|1401
4V6I|1|DA|C|1403
*
4V6I|1|DA|G|1408
4V6I|1|DA|G|1409
4V6I|1|DA|U|1410

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Bh

60S ribosomal protein pL32 (L32e)