IL_4V6I_131

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUAGUAGC*GCGAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_131 not in the Motif Atlas

Geometric match to IL_4V9F_012

Geometric discrepancy: 0.2801

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6I|1|DA|G|1444
4V6I|1|DA|U|1445
4V6I|1|DA|A|1446
4V6I|1|DA|G|1447
4V6I|1|DA|U|1448
4V6I|1|DA|A|1449
4V6I|1|DA|G|1450
4V6I|1|DA|C|1451
*
4V6I|1|DA|G|2353
4V6I|1|DA|C|2354
4V6I|1|DA|G|2355
4V6I|1|DA|A|2356
4V6I|1|DA|A|2357
4V6I|1|DA|A|2358
4V6I|1|DA|C|2359

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein rpL4 (L4p)

Chain BV

60S ribosomal protein rpL17 (L22p)