IL_4V6I_132

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_132 not in the Motif Atlas

Geometric match to IL_7RQB_050

Geometric discrepancy: 0.2216

The information below is about IL_7RQB_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4V6I|1|DA|G|1492
4V6I|1|DA|G|1493
4V6I|1|DA|U|1494
4V6I|1|DA|U|1495
*
4V6I|1|DA|A|1835
4V6I|1|DA|C|1836

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BX

60S ribosomal protein rpL25 (L23p)

Chain Bl

60S ribosomal protein rpL37 (L37e)

Chain Bo

60S ribosomal protein rpL39 (L39e)