IL_4V6I_133

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

4V6I|1|DA|G|1514

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_133 not in the Motif Atlas

Geometric match to IL_7RQB_104

Geometric discrepancy: 0.2073

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4V6I|1|DA|U|1501
4V6I|1|DA|C|1502
4V6I|1|DA|A|1503
4V6I|1|DA|A|1504
4V6I|1|DA|C|1505
*
4V6I|1|DA|G|1513
4V6I|1|DA|G|1514
4V6I|1|DA|A|1515

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain BV

60S ribosomal protein rpL17 (L22p)

Chain Bo

60S ribosomal protein rpL39 (L39e)