IL_4V6I_141
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- ACCCC*GUCU
- Length
- 9 nucleotides
- Bulged bases
- 4V6I|1|DA|C|1710
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_141 not in the Motif Atlas
- Geometric match to IL_4EYA_010
- Geometric discrepancy: 0.2802
- The information below is about IL_4EYA_010
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V6I|1|DA|A|1707
4V6I|1|DA|C|1708
4V6I|1|DA|C|1709
4V6I|1|DA|C|1710
4V6I|1|DA|C|1711
*
4V6I|1|DA|G|1735
4V6I|1|DA|U|1737
4V6I|1|DA|C|1738
4V6I|1|DA|U|1739
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain Ba
- 60S ribosomal protein rpL27 (L27e)
- Chain Bf
- 60S ribosomal protein rpL30 (L30e)
- Chain Bi
- 60S ribosomal protein rpL34 (L34e)
- Chain Bm
- 60S ribosomal protein rpL43 (L37ae)
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