IL_4V6I_146

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

4V6I|1|DA|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_146 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.1231

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4V6I|1|DA|A|1901
4V6I|1|DA|G|1902
4V6I|1|DA|U|1903
4V6I|1|DA|C|1904
4V6I|1|DA|G|1905
4V6I|1|DA|G|1906
*
4V6I|1|DA|C|2333
4V6I|1|DA|U|2334
4V6I|1|DA|G|2335
4V6I|1|DA|U|2336

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BM

60S ribosomal protein rpL23 (L14p)

Chain CA

Small subunit ribosomal RNA; SSU rRNA