IL_4V6I_147
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 4V6I|1|DA|U|1931
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_147 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0624
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V6I|1|DA|C|1918
4V6I|1|DA|G|1919
4V6I|1|DA|U|1920
4V6I|1|DA|A|1921
4V6I|1|DA|A|1922
4V6I|1|DA|C|1923
*
4V6I|1|DA|G|1928
4V6I|1|DA|G|1929
4V6I|1|DA|A|1930
4V6I|1|DA|U|1931
4V6I|1|DA|A|1932
4V6I|1|DA|A|1933
4V6I|1|DA|G|1934
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain Ac
- Unknown 40S ribosomal protein XS2
- Chain BT
- 60S ribosomal protein rpL19 (L19e)
- Chain Bm
- 60S ribosomal protein rpL43 (L37ae)
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
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