IL_4V6I_154
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GAC*GAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_154 not in the Motif Atlas
- Geometric match to IL_7A0S_107
- Geometric discrepancy: 0.2851
- The information below is about IL_7A0S_107
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_71625.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
4V6I|1|DA|G|1994
4V6I|1|DA|A|1995
4V6I|1|DA|C|1996
*
4V6I|1|DA|G|2025
4V6I|1|DA|A|2026
4V6I|1|DA|C|2027
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain Ba
- 60S ribosomal protein rpL27 (L27e)
Coloring options: