IL_4V6I_161

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_161 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.3382

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V6I|1|DA|U|2211
4V6I|1|DA|C|2212
4V6I|1|DA|A|2213
4V6I|1|DA|A|2214
4V6I|1|DA|A|2215
4V6I|1|DA|G|2216
4V6I|1|DA|U|2217
*
4V6I|1|DA|A|2228
4V6I|1|DA|A|2229
4V6I|1|DA|C|2230
4V6I|1|DA|C|2231
4V6I|1|DA|A|2232
4V6I|1|DA|A|2233
4V6I|1|DA|G|2234

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Bk

60S ribosomal protein rpL36 (L36e)