IL_4V6I_162

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_162 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.1435

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

4V6I|1|DA|G|2276
4V6I|1|DA|C|2277
*
4V6I|1|DA|G|2307
4V6I|1|DA|C|2308
4V6I|1|DA|A|2309
4V6I|1|DA|U|2310

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Ac

Unknown 40S ribosomal protein XS2

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CB

Transfer RNA; tRNA