IL_4V6I_163

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4V6I|1|DA|A|2281, 4V6I|1|DA|C|2287, 4V6I|1|DA|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_163 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.3871

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V6I|1|DA|C|2277
4V6I|1|DA|C|2278
4V6I|1|DA|A|2279
4V6I|1|DA|A|2280
4V6I|1|DA|A|2281
4V6I|1|DA|U|2282
4V6I|1|DA|G|2283
4V6I|1|DA|C|2284
4V6I|1|DA|C|2285
4V6I|1|DA|U|2286
4V6I|1|DA|C|2287
4V6I|1|DA|G|2288
*
4V6I|1|DA|C|2304
4V6I|1|DA|G|2305
4V6I|1|DA|C|2306
4V6I|1|DA|G|2307

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Ac

Unknown 40S ribosomal protein XS2

Chain CA

Small subunit ribosomal RNA; SSU rRNA