IL_4V6I_174

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_174 not in the Motif Atlas

Homologous match to IL_8P9A_328

Geometric discrepancy: 0.3713

The information below is about IL_8P9A_328

Detailed Annotation

Single stack bend with bulge

Broad Annotation

Single stack bend with bulge

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V6I|1|DA|G|2770
4V6I|1|DA|U|2771
4V6I|1|DA|C|2773
*
4V6I|1|DA|G|2787
4V6I|1|DA|C|2788

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BO

60S ribosomal protein rpL28 (L15p)

Chain Br

60S ribosomal protein rpL42 (L44e)