IL_4V6I_179

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_179 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.2145

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V6I|1|DA|U|2835
4V6I|1|DA|C|2836
4V6I|1|DA|A|2837
4V6I|1|DA|A|2838
4V6I|1|DA|G|2839
*
4V6I|1|DA|C|2849
4V6I|1|DA|G|2850
4V6I|1|DA|A|2851
4V6I|1|DA|C|2852
4V6I|1|DA|A|2853

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BI

60S ribosomal protein rpL10 (L10e)

Chain Bd

60S ribosomal protein rpL29 (L29e)