IL_4V6I_189

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUAGUAC*GGAACA

Length

13 nucleotides

Bulged bases

4V6I|1|DA|G|3022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_189 not in the Motif Atlas

Geometric match to IL_4V9F_092

Geometric discrepancy: 0.1744

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V6I|1|DA|U|3019
4V6I|1|DA|U|3020
4V6I|1|DA|A|3021
4V6I|1|DA|G|3022
4V6I|1|DA|U|3023
4V6I|1|DA|A|3024
4V6I|1|DA|C|3025
*
4V6I|1|DA|G|3030
4V6I|1|DA|G|3031
4V6I|1|DA|A|3032
4V6I|1|DA|A|3033
4V6I|1|DA|C|3034
4V6I|1|DA|A|3035

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein rpL9 (L6p)