IL_4V6I_193

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

4V6I|1|DA|A|3130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_193 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1929

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

4V6I|1|DA|A|3103
4V6I|1|DA|U|3104
4V6I|1|DA|U|3105
4V6I|1|DA|A|3106
4V6I|1|DA|U|3107
*
4V6I|1|DA|A|3127
4V6I|1|DA|G|3128
4V6I|1|DA|A|3129
4V6I|1|DA|A|3130
4V6I|1|DA|U|3131

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein rpL9 (L6p)

Chain BK

60S ribosomal protein rpL16 (L13p)

Chain Bd

60S ribosomal protein rpL29 (L29e)