IL_4V6I_206

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUCCC*GAUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_206 not in the Motif Atlas

Homologous match to IL_4V9F_104

Geometric discrepancy: 0.4272

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

4V6I|1|DC|U|32
4V6I|1|DC|U|33
4V6I|1|DC|C|34
4V6I|1|DC|C|35
4V6I|1|DC|C|36
*
4V6I|1|DC|G|41
4V6I|1|DC|A|42
4V6I|1|DC|U|43
4V6I|1|DC|C|44
4V6I|1|DC|A|45

Current chains

Chain DC

5S rRNA

Nearby chains

Chain BE

60S ribosomal protein rpL11 (L5p)

Chain BQ

60S ribosomal protein rpL5 (L18p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA