IL_4V6I_212

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGGA*UACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_212 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2683

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6I|1|CA|G|388
4V6I|1|CA|G|389
4V6I|1|CA|G|390
4V6I|1|CA|A|391
*
4V6I|1|CA|U|406
4V6I|1|CA|A|407
4V6I|1|CA|C|408
4V6I|1|CA|C|409

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AU

40S ribosomal protein S24

Chain BM

60S ribosomal protein rpL23 (L14p)

Chain BZ

60S ribosomal protein rpL24 (L24e)