IL_4V6I_216

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

4V6I|1|CA|U|912, 4V6I|1|CA|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_216 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.422

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V6I|1|CA|U|893
4V6I|1|CA|U|894
4V6I|1|CA|G|895
4V6I|1|CA|U|896
4V6I|1|CA|C|897
4V6I|1|CA|A|898
4V6I|1|CA|G|899
*
4V6I|1|CA|C|910
4V6I|1|CA|U|911
4V6I|1|CA|U|912
4V6I|1|CA|G|913
4V6I|1|CA|G|914
4V6I|1|CA|A|915
4V6I|1|CA|U|916
4V6I|1|CA|U|917
4V6I|1|CA|U|918
4V6I|1|CA|A|919

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein rpS14 (S11p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA