IL_4V6I_223
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CCUG*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6I_223 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2118
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V6I|1|CA|C|1173
4V6I|1|CA|C|1174
4V6I|1|CA|U|1175
4V6I|1|CA|G|1176
*
4V6I|1|CA|C|1463
4V6I|1|CA|G|1464
4V6I|1|CA|C|1465
4V6I|1|CA|G|1466
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain AJ
- 40S ribosomal protein rpS20 (S10p)
- Chain AM
- 40S ribosomal protein rpS18 (S13p)
- Chain AS
- 40S ribosomal protein rpS19 (S19e)
- Chain CB
- Transfer RNA; tRNA
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