IL_4V6I_253

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CCUU*AGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6I_253 not in the Motif Atlas

Geometric match to IL_6CZR_169

Geometric discrepancy: 0.2991

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

4V6I|1|DB|C|119
4V6I|1|DB|C|120
4V6I|1|DB|U|121
4V6I|1|DB|U|122
*
4V6I|1|DB|A|131
4V6I|1|DB|G|132
4V6I|1|DB|G|133
4V6I|1|DB|G|134

Current chains

Chain DB

5.8S rRNA

Nearby chains

Chain BX

60S ribosomal protein rpL25 (L23p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA