IL_4V6K_012

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_012 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.146

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V6K|1|AB|C|239
4V6K|1|AB|C|240
4V6K|1|AB|A|241
4V6K|1|AB|G|242
4V6K|1|AB|U|243
4V6K|1|AB|A|244
4V6K|1|AB|G|245
*
4V6K|1|AB|C|253
4V6K|1|AB|G|254
4V6K|1|AB|A|255
4V6K|1|AB|A|256
4V6K|1|AB|C|257
4V6K|1|AB|G|258

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AM

50S ribosomal protein L15

Chain Af

50S ribosomal protein L35