IL_4V6K_016

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V6K|1|AB|A|504, 4V6K|1|AB|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_016 not in the Motif Atlas

Geometric match to IL_4WF9_015

Geometric discrepancy: 0.1801

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

4V6K|1|AB|G|481
4V6K|1|AB|A|482
4V6K|1|AB|A|483
4V6K|1|AB|C|484
*
4V6K|1|AB|G|496
4V6K|1|AB|A|497
4V6K|1|AB|G|498
4V6K|1|AB|U|499
4V6K|1|AB|G|500
4V6K|1|AB|A|501
4V6K|1|AB|A|502
4V6K|1|AB|A|503
4V6K|1|AB|A|504
4V6K|1|AB|A|505
4V6K|1|AB|G|506
4V6K|1|AB|A|507
4V6K|1|AB|A|508
4V6K|1|AB|C|509

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AT

50S ribosomal protein L22

Chain AV

50S ribosomal protein L24