IL_4V6K_020

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V6K|1|AB|G|801, 4V6K|1|AB|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_020 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1352

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V6K|1|AB|G|674
4V6K|1|AB|A|675
4V6K|1|AB|A|676
4V6K|1|AB|A|677
4V6K|1|AB|C|678
*
4V6K|1|AB|G|799
4V6K|1|AB|A|800
4V6K|1|AB|G|801
4V6K|1|AB|A|802
4V6K|1|AB|U|803
4V6K|1|AB|A|804
4V6K|1|AB|G|805
4V6K|1|AB|C|806

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AM

50S ribosomal protein L15