IL_4V6K_022

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GUU*GGAC

Length

7 nucleotides

Bulged bases

4V6K|1|AB|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_022 not in the Motif Atlas

Geometric match to IL_4V84_071

Geometric discrepancy: 0.1985

The information below is about IL_4V84_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V6K|1|AB|G|701
4V6K|1|AB|U|702
4V6K|1|AB|U|703
*
4V6K|1|AB|G|728
4V6K|1|AB|G|729
4V6K|1|AB|A|730
4V6K|1|AB|C|731

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AD

50S ribosomal protein L2