IL_4V6K_025

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V6K|1|AB|G|776, 4V6K|1|AB|A|788, 4V6K|1|AB|A|789, 4V6K|1|AB|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_025 not in the Motif Atlas

Homologous match to IL_7A0S_021

Geometric discrepancy: 0.1511

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V6K|1|AB|G|775
4V6K|1|AB|G|776
4V6K|1|AB|G|777
*
4V6K|1|AB|C|787
4V6K|1|AB|A|788
4V6K|1|AB|A|789
4V6K|1|AB|U|790
4V6K|1|AB|C|791

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AT

50S ribosomal protein L22

Chain Ae

50S ribosomal protein L34