IL_4V6K_030
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6K_030 not in the Motif Atlas
- Homologous match to IL_5J7L_272
- Geometric discrepancy: 0.1713
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V6K|1|AB|G|864
4V6K|1|AB|C|865
4V6K|1|AB|A|866
4V6K|1|AB|C|867
4V6K|1|AB|U|868
*
4V6K|1|AB|A|909
4V6K|1|AB|A|910
4V6K|1|AB|A|911
4V6K|1|AB|C|912
Current chains
- Chain AB
- ribosomal RNA 23S
Nearby chains
- Chain AA
- 5S ribosomal RNA; 5S rRNA
- Chain AN
- 50S ribosomal protein L16
- Chain AX
- 50S ribosomal protein L27
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