IL_4V6K_032

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_032 not in the Motif Atlas

Geometric match to IL_8B0X_176

Geometric discrepancy: 0.3951

The information below is about IL_8B0X_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4V6K|1|AB|G|875
4V6K|1|AB|C|876
4V6K|1|AB|A|877
4V6K|1|AB|A|878
4V6K|1|AB|G|879
*
4V6K|1|AB|C|898
4V6K|1|AB|A|899
4V6K|1|AB|A|900
4V6K|1|AB|C|901
4V6K|1|AB|C|902

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AN

50S ribosomal protein L16