IL_4V6K_064

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

4V6K|1|AB|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_064 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.1653

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V6K|1|AB|A|1669
4V6K|1|AB|C|1670
4V6K|1|AB|U|1671
4V6K|1|AB|A|1672
4V6K|1|AB|G|1673
4V6K|1|AB|G|1674
*
4V6K|1|AB|C|1990
4V6K|1|AB|U|1991
4V6K|1|AB|G|1992
4V6K|1|AB|U|1993

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AL

50S ribosomal protein L14