IL_4V6K_076

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

4V6K|1|AB|A|1938, 4V6K|1|AB|U|1944, 4V6K|1|AB|U|1963

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_076 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.4223

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4V6K|1|AB|C|1934
4V6K|1|AB|G|1935
4V6K|1|AB|A|1936
4V6K|1|AB|A|1937
4V6K|1|AB|A|1938
4V6K|1|AB|5MU|1939
4V6K|1|AB|U|1940
4V6K|1|AB|C|1941
4V6K|1|AB|C|1942
4V6K|1|AB|U|1943
4V6K|1|AB|U|1944
4V6K|1|AB|G|1945
*
4V6K|1|AB|C|1961
4V6K|1|AB|5MC|1962
4V6K|1|AB|U|1963
4V6K|1|AB|G|1964

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA