IL_4V6K_081

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

4V6K|1|AB|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_081 not in the Motif Atlas

Geometric match to IL_7RQB_081

Geometric discrepancy: 0.1965

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

4V6K|1|AB|A|2070
4V6K|1|AB|A|2071
*
4V6K|1|AB|U|2438
4V6K|1|AB|A|2439
4V6K|1|AB|C|2440
4V6K|1|AB|U|2441

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BE

Transfer RNA; tRNA