IL_4V6K_095

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V6K|1|AB|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6K_095 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.1502

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V6K|1|AB|U|2522
4V6K|1|AB|G|2523
*
4V6K|1|AB|C|2540
4V6K|1|AB|A|2541
4V6K|1|AB|A|2542
4V6K|1|AB|G|2543

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain Ag

50S ribosomal protein L36